Biology I Syllabus for 2011-2012
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Instructor Information

E-Mail

Phone

Phone number not available

Office Location

Office Hours

Course Information

Recording Policy

Disability Statement

Any student who, because of a disabling condition, may require some special arrangements in order to meet course requirements should contact disAbility Services (Student Service Center room 119, phone 371-5436) as soon as possible.

Statement for Mental Health and Advocacy & Resource Center:

As a student you may experience a range of issues that can cause barriers to learning, such as strained relationships, increased anxiety, alcohol/drug problems, feeling down, difficulty concentrating and/or lack of motivation. These mental health concerns or stressful events may lead to diminished academic performance or reduce a student's ability to participate in daily activities. Amarillo College offers services to assist you with addressing these and other concerns you may be experiencing. If you or someone you know are suffering from any of the aforementioned conditions, you can learn more about the broad range of confidential mental health services available on campus by calling the AC Counseling Center at 806-371-5900. The AC Counseling Center website is https://www.actx.edu/counseling/ . Also, if you are in need of social services (affordable housing, utilities, transportation, food, clothing, childcare, medical/dental/vision, legal), please call the AC Advocacy & Resource Center at 806-371-5439. The AC Advocacy & Resource Center website is https://www.actx.edu/arc

Amarillo College Tutoring for Success Policy:

Administrative Drop Policy

N/A

Student Withdrawal Procedures

N/A

Privacy Statement

The Amarillo College Privacy Policy is found at https://www.actx.edu/-amarillo-college-privacy-notice , and applies to all Amarillo College students.  If you have questions about this privacy statement or you believe that your personal information has been released without your consent, send email to humanresources@actx.edu .

Course

BIOL-1406-002 Biology I

Prerequisites

RDNG 0331-minimum grade of C or a score on a state-approved test indicating college-level reading skills; SCIT 1307 recommended

Course Description

Fundamentals of molecular biology, cell biology, genetics and the underlying evolutionary theory of each.

Student Resources Student Resources Website

Department Expectations

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Occupational License Disclaimer

Hours

(4 hrs; 3 lec, 3 lab)

Class Type

On Campus Course

Syllabus Information

Textbooks

\  Campbell Biology, 9th Edition, Reece et al.

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\ Mastering Biology Access (Online Homework Program).

Supplies

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\ Fine-point sharpie (permanat marker), calculator (with square root) and computer access with reliable in

Student Performance

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\ STUDENT PERFORMANCE, COMPETENCIES AND OBJECTIVES: After studying the material presented in this course of study, the student will be able to do the following as evaluated by the faculty in the department.

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\ 1. Describe the underlying principles of evolution and inclusive fitness.
\ 2. Describe the difference between a hypothesis and a theory.
\ 3. Describe the biological organizational levels from chemical aspects through the biosphere.
\ 4. Describe the scientific method and be able to generate null and alternative hypotheses.
\ 5. Demonstrate the use of simple and parametric statistics, and be able to apply the appropriate statistical test to accept and reject hypotheses, including paired and unpaired Student’s t-Test.
\ 6. Demonstrate a proficiency in the use of Microsoft Excel or another spreadsheet program to include graphing, table generation, and formulas for simple statistics.
\ 7. Describe the metric system and demonstrate conversions within the International System and conversion of Standard System measurements to SI.
\ 8. Discuss the characteristics of living organisms.
\ 9. Discuss basic chemistry to include: the periodic table; chemical bonding; properties of water; and properties of acids, bases, and salts.
\ 10. Describe the characteristics and functions of organic compounds essential to living systems.
\ 11. Describe the components and functions of bacteria, archean, and eukaryotic cells, and be able to contrast differences between them.
\ 12. Describe the characteristics of cellular membranes, to include membrane functions, active and passive transport mechanisms, and trans-membrane protein functions.
\ 13. Explain enzymatic energetics, to include the laws of thermodynamics, endergonic and exergonic reactions, and enzyme regulation.
\ 14. Discuss the chemistry of aerobic and anaerobic cellular respiration, to include the stages and intermediates of glycolysis, Krebs' cycle, and electron transport system.
\ 15. Discuss ethanol and lactic acid fermentation and how they are utilized by living system.
\ 16. Compare and contrast photophosphorylation, substrate phosphorylation, and oxidative phosphorylation mechanisms.
\ 17. Describe the properties of the electromagnetic spectrum and the characteristics of light as related to photosynthetic pigments.
\ 18. Discuss the chemistry of photosynthesis, to include photosystem I, photosystem II, chemiosmosis, and the components of the Calvin cycle.
\ 19. Compare and contrast photorespiration, C3, C4, and CAM photosynthetic pathways.
\ 20. Describe the structure of DNA, RNA, chromosomes, and chromatin fibers.
\ 21. Give a description of DNA replication, to include nucleotide assembly, leading and lagging strands, replication enzymes, and telomeres.
\ 22. Give a description of RNA synthesis to include: mRNA, transcription enzymes, 5’ caps, introns, exons, and poly-A tails.
\ 23. Give a description of protein synthesis to include: ribosomal structure and function, tRNA, codons and anticodons.
\ 24. Compare and contrast the differences between bacteria and eukaryotic DNA replication, transcription, and translation mechanisms.
\ 25. Explain the process of transcription and transfection and describe how this is use in current biological research.
\ 26. Give a detailed description of gene expression and regulation pathways in both bacteria and eukaryotic organisms.
\ 27. Be able to predict the amino acid sequence of a protein which would be synthesized from a gene sequence to include, template and coding DNA strands, TATA box, promoters, start and stop codons, 5’ and 3’ orientations.
\ 28. Give an analysis of the cell cycle to include: all phases of mitosis and cell cycle regulation.
\ 29. Describe the process of meiosis and compare it to mitosis.
\ 30. Discuss the basic principles of Mendelian genetics to include the laws of: dominance, independent assortment, and segregation; and codominance, pleiotrophy, epistasis, and polygenic traits.
\ 31. Predict genetic outcome probabilities for two parents of know genotype and predict genotype of the parents from genetic outcomes.
\ 32. Describe and identify autosomal recessive, autosomal dominant, sex-linked, and aneuploid genetic disorders.
\ 33. Discuss and demonstrate the procedure of polymerase chain reaction to include all reagents and there functions, temperature regiments and there functions, and how PCR is used in modern biological research.
\ 34. Demonstrate an understanding of and the use of the following equipment or techniques: micropipettors, DNA electrophoresis, DNA isolation, DNA amplification (PCR), microarrays, aseptic microbial techniques, restriction enzyme analysis, microbial transformation, microscopes, and electronic data collectors.
\ 35. Discuss current biotechnology research.

Students Rights and Responsibilities

Student Rights and Responsibilities

Log in using the AC Connect Portal

In order to receive your AC Connect Email, you must log in through AC Connect at https://acconnect.actx.edu .

If you are an active staff or faculty member according to Human Resources, use "Exchange". All other students, use "AC Connect (Google) Email".

Expected Student Behavior

\ GRIEVANCE PROCEDURE: If a student is having a problem with the course policies or the instructor, he or she should first try and resolve any such problems with the instructor.  If the problem is not resolved the student may proceed to the Department of Mathematics, Sciences and Engineering Chairperson, Associate Vice President of Academic Affairs, and the College President, IN THAT ORDER.

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\ SAFETY: "Material Safety Data Sheets (MSDS) are stored in SCIE 110.
\ For any emergency contact Campus Police 371-5911

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\ TELEPHONES/PAGERS: It is the policy of the Biology Department that cell phones and pagers must be turned off or in the silent mode in the classroom and the computer lab. If a student gets a phone call during class he/she will NOT answer it during class time unless prior approval by the instructor. Please be considerate to others.

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\ FOOD/DRINK: Food and drink are allowed in the classroom and laboratory unless posted otherwise.

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\ WITHDRAW: A grade of "W" will be given for drops or withdraws on or before the published official withdraw date.  You may not drop or withdraw after that date.

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\ FINAL GRADE CHANGES: The final grade turned into the registrar office will not be changed unless approved by full time biology faculty committee. Request must be submitted in writing.

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\ TEST RULES: Do nothing which would appear to involve cheating.  Failure to abide by the test rule will result in a grade of zero.  Cell phones ringing during a major exam will result in a zero, regardless if you answer it or not.  Once the exam has been started you may not leave the classroom for any reason.  Use the facilities prior to starting the exam.  When you turn your exam in, it is final.  You can not get it back to make changes. If you believe that a paper has been graded incorrectly, please return it with a written explanation which must include: 1) your name, 2) the number of the question(s) you wish to have reconsidered, and 3) a detailed explanation of the mistake and documentation for the correct answer (include page numbers and source).

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\ QUIZZES - You will get two attempts on online quizzes (AC Online) and one attempt on Mastering Biology assignments (Publisher Website).  The best score on quizzes will be recorded. If a problem occurs during a quiz ( example: loss of internet connection, computer lock up, accidently open it prematurely, or you simply forgot to submit it) that will count as one attempt.  Your instructor will make the final decission to resets the quiz or not.  You will get only one reset on a quiz per semester for any reason. Master Biology assignment grade will decrease with the number of hints and missed questions. You must finish within the allotted time frame.  Failure to comply with this rule will result in a decreased score (10 points /min over) on the quiz. You must also finish before the due date and time or a grade of zero will be assigned.

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\ BAD WEATHERIf classes are canceled due to inclement weather, you are responsible for reading and learning the material that would have been covered.  If an exam was scheduled and classes are canceled, the exam will be given the next class meeting. (BE PREPARED) If class is canceled the last day of class and an exam was scheduled, then the exam will be added to the Final Exam and the questions will count as the exam and as the final exam. Cancellations will be announced on the Radio by 6:30 AM or by 3:00 PM for evening classes. Also check the AC website and MyAC.

Grading Criteria

\ EVALUATION: Lecture and lab will count for 75 % of the course grade, and the final exam will count for 25% of the course grade.
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\ Lecture/Laboratory Exams  - 60%
\ Assignments                     - 15%
\ Final Exam                        - 25%
\                                         100%

\ GRADING: Grades will not be curved and NO extra credit.
\ 89.5 - 100 = A
\ 79.5 - 89.4 = B
\ 69.5 - 79.4 = C
\ 59.5 - 69.4 = D
\ 00.0 - 59.4 = F

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\ LECTURE/LABORATORY EXAMS: 60% of the total grade for the semester.
\ Lecture and laboratory material will be combined into five (5) exams. Each exam will have approximately 30-50 scantron questions (e.g., multiple choice, matching, etc.), and an essay component (e.g., short answer, drawings, definitions, concept questions). The majority of exam material will come from the lecture and laboratory notes and assignments, but some material can come from the text book, online assignments, and other assigned material.  One exam (may be assigned in two sub-parts) woll cover online assignments and will be taken in the Sciences Studey Center (Warren Hall 110).There are only 6 computers in the Study Center, so do not wait until the last minute to attemt the exam. This online exam will be proctored, and you may not use the book, notes, online information sources, or any other ancillary materials while taking the exam. One major exam grade will be dropped and the remaining four exam scores will be used in the grade calculation. If youMISS or COME IN LATE to an exam for any reason or if you fail to complete the online exam by the due date, a grade of zero will be assigned for that exam and that will be your drop for the semester. NO MAKE-UPS will be given for any reason. Please do not ask.

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\ QUIZZES AND ADDITIONAL ASSIGNMENTS: 15% of the total grade for the semester.
\ There will be online quizes, Mastering Biology assignments, and additional assignments made during the semester. Some assignments and quizzes will be online, and these will be annoounced one week prior to the due date 9indicated on the AC Online Calendar. IN class quizzes
will be both announced and unannounced.  These can be given at any time during the lecture or lab class. The quizzes will be fill-in-the-blank, multiple choice, labeling, and/or short answer, and will generally range from 5-30 questions. Assignments will be made one week prior to the due date.  If you miss a class, it is your responsibility to find out about any material you missed or assignments that were made. The lowest grade from this category will be dropped.
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\ If you MISS, COME IN LATE, or LEAVE EARLY  to any quiz for any reason, a grade of zero will be assigned for that grade. In order to receive full credit on homework assignments, the assignment must be turned in on the due date. Homework will be accepted until the next class period after the due date, but 20% will be deducted from the grade. No assignment will be accepted after this, and a grade of zero will be recorded. Online quizes and assignments will not be eligible for the one day late submission rule. NO MAKE-UPS will be given for any reason on any quiz or homework assignment, so Please DO NOT ASK.

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\ FINAL EXAM: 25% of the total grade for the semester.
\ The Final Exam is comprehensive and mandatory. It will cover everything from the beginning of the semester and some material will come from previous exams and the rest comes from the text or other notes.
\ Ranges from 100 - 200 questions. 

Attendance

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\ Regular attendance is necessary for satisfactory achievement, therefore it is the responsibility of the student to attend each class.

Calendar

\  CHRONOLOGY OF LECTURE AND LABORATORY TOPICS

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\ LECTURE
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\ LABORATORY
\ WEEK 1\  
\ Introduction to Biology\ Safety, Scientific Method
\ WEEK 2\  
\ General Chemistry\  Metric Measurements and Graphing with Excel
\ WEEK 3\  
\ Organic Chemistry  \ Biochemistry
\ WEEK 4\  
\ Cell Structure \ The Microscope & Cells
\ WEEK 5\  
\ Membranes and Interactions \ Excel and Statistics
\ WEEK 6\  
\ Cell Structure\ Diffusion and Osmosis 
\ WEEK 7\  
\ Energy Releasing Pathways \ Enzymes 
\ WEEK 8\  
\ Cellular Respiration\ Cellular Respiration 
\ WEEK 9\  
\ Photosynthesis  \ Electrophoresis
\ WEEK 10\  
\ DNA, Genes, & expression \ DNA Restriction Analysis
\ WEEK 11\  
\ DNA, Genes, & expression \ PCR
\ WEEK 12\  
\ DNA, Genes, & expression \ Transformatiom
\ WEEK 13\  
\ The Cell Cycle\ Mitosis
\ WEEK 14\  
\ Patterns of Inheritance \ Genetics
\ WEEK 15\  
\ Biotechnology \ Genetics
\ WEEK 16\  
\ Final Exam Week\  \
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Additional Information

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Syllabus Created on:

11/30/-1 12:00 AM

Last Edited on:

11/30/-1 12:00 AM